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yuxO [2019-07-10 09:11:24]
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yuxO [2019-07-10 09:11:24]

similar to thioesterase
locus
BSU31670
pI
6.47
mw
13.64 kDa
protein length
126 aa Sequence Blast
gene length
381 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
srfB

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]
  • Gene

    Coordinates
    3,252,405 3,252,785

    The protein

    Protein family

  • UPF0152 (paaI) family (according to Swiss-Prot)
  • Structure

  • [PDB|4QD8] (from Pseudomonas aeruginosa, 45% identity) [pubmed|]
  • Expression and Regulation

    Operons

    genes
    [gene|FDACEF9DDC3BEA4EB013AE67BC47ADA532F00205|comQ]-[gene|60D6EB02923D9ADE88F61A8CBBD882BA8BDD457E|comX]-[gene|5A00E233F0B5A0DAB18D2ECC55527F1911987F86|comP]-[gene|7832489F11F606BCF637EC23BAAB41AD10237EBB|comA]-[gene|015989AAB862E418C944AB35DA3605863F059CE9|yuxO]
    description
    [Pubmed|22383849]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|2507523], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
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    Biological materials

    Mutant

  • MGNA-B560 (yuxO::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1559 NBRP B. subtilis, Japan]
  • BKE31670 ([gene|015989AAB862E418C944AB35DA3605863F059CE9|yuxO]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE31670 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ATCCATCTCTACACCCCCCA, downstream forward: _UP4_TAAAAAAACAGCCGGAACTC
  • BKK31670 ([gene|015989AAB862E418C944AB35DA3605863F059CE9|yuxO]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK31670 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ATCCATCTCTACACCCCCCA, downstream forward: _UP4_TAAAAAAACAGCCGGAACTC
  • References

  • 2507523